LICENSE
MANIFEST.in
NEWS
README.md
requirements.txt
setup.py
TAMO/GetDataFiles.py
TAMO/HT.py
TAMO/MotifMetrics.py
TAMO/MotifTools.py
TAMO/Sitemap.py
TAMO/__init__.py
TAMO/localpaths.py
TAMO/paths.py
TAMO/Clustering/Kmedoids.py
TAMO/Clustering/MotifCompare.py
TAMO/Clustering/UPGMA.py
TAMO/Clustering/__init__.py
TAMO/Clustering/Clustering/Kmedoids.py
TAMO/Clustering/Clustering/MotifCompare.py
TAMO/Clustering/Clustering/UPGMA.py
TAMO/Clustering/Clustering/__init__.py
TAMO/DataSources/GO.py
TAMO/DataSources/Holstege.py
TAMO/DataSources/Novartis.py
TAMO/DataSources/PDB.py
TAMO/DataSources/SGD.py
TAMO/DataSources/Yeast6kArray.py
TAMO/DataSources/__init__.py
TAMO/DataSources/DataSources/GO.py
TAMO/DataSources/DataSources/Holstege.py
TAMO/DataSources/DataSources/Novartis.py
TAMO/DataSources/DataSources/PDB.py
TAMO/DataSources/DataSources/SGD.py
TAMO/DataSources/DataSources/Yeast6kArray.py
TAMO/DataSources/DataSources/__init__.py
TAMO/MD/AlignAce.py
TAMO/MD/EM.py
TAMO/MD/MDscan.py
TAMO/MD/MDsupport.py
TAMO/MD/Meme.py
TAMO/MD/TAMO_EM.py
TAMO/MD/THEME.py
TAMO/MD/__init__.py
TAMO/MD/MD/AlignAce.py
TAMO/MD/MD/EM.py
TAMO/MD/MD/MDscan.py
TAMO/MD/MD/MDsupport.py
TAMO/MD/MD/Meme.py
TAMO/MD/MD/TAMO_EM.py
TAMO/MD/MD/THEME.py
TAMO/MD/MD/__init__.py
TAMO/MD/MDsupport_source/MDsupport.cxx
TAMO/MD/MDsupport_source/MDsupport.h
TAMO/MD/MDsupport_source/MDsupport_wrap.cxx
TAMO/MD/MDsupport_source/MDsupport_source/MDsupport.h
TAMO/MDconvert/__init__.py
TAMO/MDconvert/ace2tamo.py
TAMO/MDconvert/kellis2tamo.py
TAMO/MDconvert/meme2tamo.py
TAMO/MDconvert/memeset2tamo.py
TAMO/MDconvert/tamo2table.py
TAMO/MDconvert/tamo2tamo.py
TAMO/MDconvert/MDconvert/__init__.py
TAMO/MDconvert/MDconvert/ace2tamo.py
TAMO/MDconvert/MDconvert/kellis2tamo.py
TAMO/MDconvert/MDconvert/meme2tamo.py
TAMO/MDconvert/MDconvert/memeset2tamo.py
TAMO/MDconvert/MDconvert/tamo2table.py
TAMO/MDconvert/MDconvert/tamo2tamo.py
TAMO/seq/Background.py
TAMO/seq/FakeFasta.py
TAMO/seq/Fasta.py
TAMO/seq/GenerateFastas.py
TAMO/seq/Human.py
TAMO/seq/__init__.py
TAMO/seq/seq/Background.py
TAMO/seq/seq/FakeFasta.py
TAMO/seq/seq/Fasta.py
TAMO/seq/seq/GenerateFastas.py
TAMO/seq/seq/Human.py
TAMO/seq/seq/__init__.py
TAMO/util/Arith.py
TAMO/util/PermuteTools.py
TAMO/util/Poisson.py
TAMO/util/WMWtest.py
TAMO/util/__init__.py
TAMO/util/swilk.py
TAMO/util/swilk_source/swilk.cxx
TAMO/util/swilk_source/swilk_wrap.cxx
TAMO/util/util/Arith.py
TAMO/util/util/PermuteTools.py
TAMO/util/util/Poisson.py
TAMO/util/util/WMWtest.py
TAMO/util/util/__init__.py
TAMO/util/util/swilk.py
abseqPy/__init__.py
abseqPy/abseqQC.py
abseqPy/argsParser.py
abseqPy/config.py
abseqPy/logger.py
abseqPy/utilities.py
abseqPy/versionManager.py
abseqPy.egg-info/PKG-INFO
abseqPy.egg-info/SOURCES.txt
abseqPy.egg-info/dependency_links.txt
abseqPy.egg-info/entry_points.txt
abseqPy.egg-info/requires.txt
abseqPy.egg-info/top_level.txt
abseqPy/IgMultiRepertoire/AbSeqWorker.py
abseqPy/IgMultiRepertoire/IgMultiRepertoire.py
abseqPy/IgMultiRepertoire/PlotManager.py
abseqPy/IgMultiRepertoire/__init__.py
abseqPy/IgRepAuxiliary/IgBlastWorker.py
abseqPy/IgRepAuxiliary/PrimerWorker.py
abseqPy/IgRepAuxiliary/RefineWorker.py
abseqPy/IgRepAuxiliary/RestrictionSitesScanner.py
abseqPy/IgRepAuxiliary/__init__.py
abseqPy/IgRepAuxiliary/annotateAuxiliary.py
abseqPy/IgRepAuxiliary/diversityAuxiliary.py
abseqPy/IgRepAuxiliary/primerAuxiliary.py
abseqPy/IgRepAuxiliary/productivityAuxiliary.py
abseqPy/IgRepAuxiliary/restrictionAuxiliary.py
abseqPy/IgRepAuxiliary/seqUtils.py
abseqPy/IgRepAuxiliary/upstreamAuxiliary.py
abseqPy/IgRepReporting/__init__.py
abseqPy/IgRepReporting/abundanceReport.py
abseqPy/IgRepReporting/diversityReport.py
abseqPy/IgRepReporting/igRepPlots.py
abseqPy/IgRepReporting/productivityReport.py
abseqPy/IgRepReporting/restrictionReport.py
abseqPy/IgRepertoire/IgRepertoire.py
abseqPy/IgRepertoire/__init__.py
abseqPy/IgRepertoire/igRepUtils.py